MmuEX6018478 @ mm10
Exon Skipping
Gene
ENSMUSG00000048764 | Tmprss11f
Description
transmembrane protease, serine 11f [Source:MGI Symbol;Acc:MGI:2442348]
Coordinates
chr5:86521898-86530150:-
Coord C1 exon
chr5:86529891-86530150
Coord A exon
chr5:86528160-86528302
Coord C2 exon
chr5:86521898-86524170
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATCCATGTGTATATAATAGGGC
3' ss Score
5.45
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAACAGAGACCCAACTAAATGGATTGTCACCTTTGGTACAACTATAACACCACCTTTAGTCAAACGAAGTGTTGGGAAGATTATCATCCATGAAGAGTACCACAGAGATACCAATGAAAACGACATTGCTCTAGCTCAGCTAACCACCCGCGTCGAGTTTTCAAATGTGGTTCAGAGAGTCTGCCTCCCAGATTCATCTATGAAATTGCCACCGAAAACAAGTGTTTTTGTCACAGGATTTGGGTCTATTGTAGATGATG
Seq A exon
GGCCTACACAAAATAAACTCCGGCAGGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACGATGGCTTGATAACTCCAGGGATGCTGTGCGCTGGATTCATGGAAGGAAAAATAGATGCATGTAAG
Seq C2 exon
GGTGATTCTGGTGGACCTTTGGTTTATGACAATCGGGACATCTGGTACATTGTGGGCATAGTAAGTTGGGGACAATCTTGTGCTCTTCCAAACAAGCCTGGAGTCTACACAAGAGTGACTAAGTATCGAGACTGGATAGCCTCCAAGACTGGCCTCTAAAGTATACTGTTGTGAGTGATGGCCATAGCCCACGAAGCAGGATACCTGCAGATTGTACAGTATTACTTAGAGAGTTGTGAGCTACAGTCACAGCCCATGGAACAGGATGCCTGCAGATAGTACATTATGCGCATTGTTACTTAGAGTCATTGGGGGTAAATGAGTGCTTCTGCCAGATGTGAAGGACTCTTCAGATGGAGACCAATTTAATAACATGAGGTGACTTTTTGTGCATAAACTTTACCAAGAAGGAAGAAAACTTAGCAAATGACAGGCAGCACCAGCATCTCACTCGTAAAGGTGACTCCTTAATGTGACAAACATAAATAGCTTCCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048764-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.3=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACATTGCTCTAGCTCAGC
R:
CCAGGCTTGTTTGGAAGAGCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types