BtaEX6031498 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001925 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr6:85255406-85259138:-
Coord C1 exon
chr6:85258879-85259138
Coord A exon
chr6:85257594-85257736
Coord C2 exon
chr6:85255406-85255567
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTTATACTTAATAGGCA
3' ss Score
7.31
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CCACTCTGATCCTCGCCAATGGATTGCCACCTTTGGTACTTCCACAATATCTCCTCAACTGAGAGTAGGAGTAAGGAATATTTTAATCCATGACAATTATAAACCTGAAACTCATGAAAACGATATTGCACTCGTACAACTTGATAGAGAAGTCACCTTTAACAGATATATTCATACAGTGTGTCTCCCAGAGGCTAACCAGGCCATTTCAGCTGGTTCCACTGCTTATGTAACAGGATGGGGATCTCAGAGTTATAGCG
Seq A exon
GCAGCACAGTTTCAGATCTAAACCAAGGACGGGTCAATATAATAAGTAATACTGTATGTAACACACCAGCTGGTTATAATGGAGCCGTCCTGTCTGGAATGCTATGTGCTGGACTACCTGAAGGTGGAGTGGACGCGTGCCAG
Seq C2 exon
GGTGACTCTGGTGGCCCTCTAGTACAAGAAGACTCACGGCAACACTGGTTCATCGTGGGGATAGTAAGCTGGGGGTATCAATGTGGTCTGCCAGATAAACCAGGAGTATACACTAGAGTGACAGCCTACCGTGACTGGATAACCCAACAAACTGGTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001925-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCACCTTTGGTACTTCCA
R:
TAGAGGGCCACCAGAGTCAC
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]