MmuEX6018456 @ mm9
Exon Skipping
Gene
ENSMUSG00000061259 | Tmprss11d
Description
transmembrane protease, serine 11d [Source:MGI Symbol;Acc:MGI:2385221]
Coordinates
chr5:86731242-86738548:-
Coord C1 exon
chr5:86738289-86738548
Coord A exon
chr5:86735292-86735434
Coord C2 exon
chr5:86731242-86732797
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTATACTAAATAGGCA
3' ss Score
6.82
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTATCCTAATCCTCAATATTGGACAGCCACCTTTGGGGTTTCTACAATGAGCCCTAGGCTGAGAGTGAGAGTAAGGGCTATTTTAGCCCACGACGGGTACAGCTCCGTAACTCGTGACAATGACATCGCAGTTGTACAACTTGACAGATCTGTCGCCTTTTCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTTACAGGATGGGGATCTCTCACATATGGAG
Seq A exon
GCAACGCAGTCACAAATCTACGGCAAGGAGAGGTCAGAATAATAAGTTCAGAGGAATGCAATACGCCAGCTGGTTACAGTGGAAGTGTCTTGCCAGGAATGCTGTGTGCTGGAATGCGTTCAGGGGCCGTGGATGCATGCCAG
Seq C2 exon
GGTGATTCAGGTGGCCCGCTAGTACAAGAAGACTCAAGGCGGCTTTGGTTTGTTGTGGGCATTGTGAGCTGGGGATATCAGTGTGGCCTCCCAAATAAGCCAGGCGTGTATACTCGAGTGACAGCCTACCGCAACTGGATCAGACAGCAGACGGGAATCTAGTGCAACCGAGGAAAAAACGTGCCATGAGGTCTCTGTATCCAAGTGTGACTGACTCGGATGCCATGGCTTCACATTTCAACTGCAAAGGAGACTGGAAATGCCCCTTCTGAACGTCCCATTACATAAATATGGTTTAACTGTTTAGTATTTCTTTGTCGGTACAGATTTTTACTTTCTTGAGGAAAAAAAAAACATGAACATGGCTAAGTAAGAATTATGTTAGGCTAGTAACAGGAAGACATTTATTACATGGGTGGTCAGGTGTAGTAGTGAGAAGTCAGGTAAGTTAAGTCAATAATTTACAGAAAATAATGTCAGGTAGTCCTAACGTTAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061259-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTCTCCCAGCAGCAACC
R:
CGGTTGCACTAGATTCCCGTC
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: