HsaEX6084587 @ hg38
Exon Skipping
Gene
ENSG00000153802 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr4:67820876-67827520:-
Coord C1 exon
chr4:67827261-67827520
Coord A exon
chr4:67825732-67825874
Coord C2 exon
chr4:67820876-67822498
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTTATAACAAACAGGCC
3' ss Score
6.95
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CAACTCTAATCCTCGTGACTGGATTGCCACGTCTGGTATTTCCACAACATTTCCTAAACTAAGAATGAGAGTAAGAAATATTTTAATTCATAACAATTATAAATCTGCAACTCATGAAAATGACATTGCACTTGTGAGACTTGAGAACAGTGTCACCTTTACCAAAGATATCCATAGTGTGTGTCTCCCAGCTGCTACCCAGAATATTCCACCTGGCTCTACTGCTTATGTAACAGGATGGGGCGCTCAAGAATATGCTG
Seq A exon
GCCACACAGTTCCAGAGCTAAGGCAAGGACAGGTCAGAATAATAAGTAATGATGTATGTAATGCACCACATAGTTATAATGGAGCCATCTTGTCTGGAATGCTGTGTGCTGGAGTACCTCAAGGTGGAGTGGACGCATGTCAG
Seq C2 exon
GGTGACTCTGGTGGCCCACTAGTACAAGAAGACTCACGGCGGCTTTGGTTTATTGTGGGGATAGTAAGCTGGGGAGATCAGTGTGGCCTGCCGGATAAGCCAGGAGTGTATACTCGAGTGACAGCCTACCTTGACTGGATTAGGCAACAAACTGGGATCTAGTGCAACAAGTGCATCCCTGTTGCAAAGTCTGTATGCAGGTGTGCCTGTCTTAAATTCCAAAGCTTTACATTTCAACTGAAAAAGAAACTAGAAATGTCCTAATTTAACATCTTGTTACATAAATATGGTTTAACAAACACTGTTTAACCTTTCTTTATTATTAAAGGTTTTCTATTTTCTCCAGAGAACTATATGAATGTTGCATAGTACTGTGGCTGTGTAACAGAAGAAACACACTAAACTAATTACAAAGTTAACAATTTCATTACAGTTGTGCTAAATGCCCGTAGTGAGAAGAACAGGAACCTTGAGCATGTATAGTAGAGGAACCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153802-'16-15,'16-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCACCTGGCTCTACTGCT
R:
CAGACTTTGCAACAGGGATGC
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains