RnoEX6042005 @ rn6
Exon Skipping
Gene
ENSRNOG00000055991 | Tmprss11d
Description
transmembrane serine protease 11D [Source:RGD Symbol;Acc:620654]
Coordinates
chr14:23387253-23392991:+
Coord C1 exon
chr14:23387253-23387512
Coord A exon
chr14:23389452-23389594
Coord C2 exon
chr14:23392667-23392991
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTATACTAAATAGGCA
3' ss Score
6.89
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTACTCGAATCCTCAACAATGGACAGCCACCTTTGGTGTTTCTACAATAAGTCCTAGGTTAAGAGTGAGAGTAAGGGCTATTTTAGCCCATGCTGAGTACAACTCCATAACTCGTGATAATGATATTGCAGTTGTACAACTTGACAGACCTGTCACCTTTACCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATACCTGATTCCGTCGCATATGTCACAGGATGGGGATCTCTCACTTATGGAG
Seq A exon
GCAACACGGTCACAAATCTACAGCAAGGAGAGGTCAGAATAGTAAGTTCGGAGGTGTGCAACGAGCCAGCTGGCTACGGTGGGAGTGTCTTGCCAGGAATGCTCTGTGCTGGAGTCCGTTCAGGGGCCGTGGATGCATGCCAG
Seq C2 exon
GGTGATTCTGGTGGCCCACTAGTACAAGAAGACACAAGGCGGCTTTGGTTTGTCGTGGGGATTGTGAGCTGGGGATATCAATGTGGCCTGCCAAATAAGCCAGGAGTGTATACGCGAGTGACAGCCTACCGCAACTGGATTAGGCAGCAGACTGGAATCTAGGGCGACCGAGGAAAACGCGCCGCCTCCCGTGAAGTCTGTACCCAAGTGCGCCTGATTCAAATGCCGCAGCCTCGCTTTTCAACTGCCAAGGAAACTGGAAACGTCCCATTTCAACATCCCATTACATAAATATGGTTTAACAGTTTAGCATTTCTTTGTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055991-'13-8,'13-7,14-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTCTCCCAGCAGCAACC
R:
GGTCGCCCTAGATTCCAGTCT
Band lengths:
251-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]