MmuEX6021315 @ mm10
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130014679-130016373:-
Coord C1 exon
chr5:130016296-130016373
Coord A exon
chr5:130016097-130016174
Coord C2 exon
chr5:130014679-130014731
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTATTCCCTATTTCCCACAGCCA
3' ss Score
8.48
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGAACGTGATGTCCTCTTCCCAGGGTACACACACTTGCAGAGAGCTCAGCCCATTCGCTGGAGCCACTGGATCCTGAG
Seq A exon
CCACGCTGTTGCGCTGACACGAGATTCAGAGAGACTCTTGGAGGTGCAGAAGCGGATCAATGTCTTGCCACTGGGGAG
Seq C2 exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGCTACTCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-'18-26,'18-23,19-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.3=100)
A:
PF0020615=Lyase_1=FE(10.3=100)
C2:
PF0020615=Lyase_1=PU(13.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCCTCTTCCCAGGGT
R:
GAGTAGCTCCCGGTCCACAC
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types