RnoEX6064098 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30173600-30175033:+
Coord C1 exon
chr12:30173600-30173677
Coord A exon
chr12:30173792-30173869
Coord C2 exon
chr12:30174981-30175033
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTAATACCTATTTCCCACAGTCA
3' ss Score
6.89
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGTGTGAAGTCCTCTTCCCTGGGTACACACACTTGCAGAGAGCTCAGCCCATCCGCTGGAGCCACTGGATCCTGAG
Seq A exon
TCACGCCGTTGCGCTGACACGAGATTTAGAGAGACTGAAGGAGGTGCAGAAGCGGATCAATGTCCTGCCACTGGGCAG
Seq C2 exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGTTCCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(8.8=100)
A:
PF0020615=Lyase_1=FE(8.8=100)
C2:
PF0020615=Lyase_1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGTCCTCTTCCCTGGG
R:
AGGAACTCCCGGTCCACAC
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]