MmuEX6021817 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137848884-137851026:-
Coord C1 exon
chr5:137850809-137851026
Coord A exon
chr5:137849493-137849634
Coord C2 exon
chr5:137848884-137849101
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTGCCTTCTGCAGGAA
3' ss Score
11.99
5' ss Seq
TCCGTAAGG
5' ss Score
6.06
Exon sequences
Seq C1 exon
CTCTGCAGTGCCCAGCCCACAGCCTATTCACCAACTGCCTTCCCTCCTGTCTGCCTTCCTGCTTGGACCCGGATGGCCTCTGTAAGGGAGCCAGTCCCAAAGTCCCCTCCTCTTGCAAGGAAGGCTGCATCTGTCAATCTGGCTACGTGCTGAGTAACAACAAGTGCCTGCTCAGAAATCGTTGTGGCTGCAAAGATGCTCACGGTGCGCTCATCCCA
Seq A exon
GAAGACAAGACCTGGGTCTCCAGAGGCTGCACCCAGAGCTGTGTCTGCACAGGAGGAAGCATCCAGTGCCTGAGTTTCCAGTGTCCCCCTGGGGCATACTGCAAGGACAATGAAGATGGCAGCAGTAACTGTGCCAGAATCC
Seq C2 exon
CTCCGCAATGTCCAGCCAACAGCCACTACACTGACTGCTTTCCCCCCTGTCCACCTTCTTGCTCGGACCCAGAGGGCCACTGTGAAGCCTCTGGCCCCAGAGTCCCCTCCACTTGCAGGGAAGGCTGCCTCTGCAACCCTGGCTTTGTGCTCGATAGGGACAAGTGTGTGCCCAGAGTTGAGTGTGGCTGCAAAGATGCACAGGGTGCTCTCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'62-63,'62-62,63-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGAAATCGTTGTGGCT
R:
TTGCAGCCACACTCAACTCTG
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: