HsaEX7004286 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100784623-100788136:+
Coord C1 exon
chr7:100784623-100784834
Coord A exon
chr7:100785997-100786141
Coord C2 exon
chr7:100787889-100788136
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTGTAACTTCTACAGCTG
3' ss Score
8.78
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
CTCTGGAATGCCCTGCCTACAGCAGCTACACCAACTGCCTTCCCTCCTGCTCACCCTCCTGCTGGGACCTGGATGGCCGGTGTGAGGGCGCCAAAGTCCCCTCTGCCTGCGCTGAGGGCTGCATTTGTCAGCCCGGCTATGTGCTGAGTGAAGACAAGTGTGTCCCCAGAAGTCAGTGTGGCTGCAAGGATGCCCATGGTGGCTCCATCCCT
Seq A exon
CTGGGCAAGAGCTGGGTCTCCAGCGGTTGCACGGAGAAGTGTGTCTGCACGGGAGGAGCCATTCAGTGCGGGGACTTCCGATGCCCCTCTGGGTCCCACTGCCAGCTCACTTCCGACAACAGCAACAGCAATTGTGTCTCAGACA
Seq C2 exon
AGTCTGAACAATGCTCAGTCTATGGCGACCCCCGTTACCTCACATTTGACGGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTATGTTCTGATCAAGACTGTGGACGTACTGCCTGAGGGGGTGGAGCCCCTCCTCGTGGAAGGACGCAACAAGATGGATCCGCCCAGGAGCTCCATCTTCTTGCAGGAAGTGATTACCACCGTCTACGGCTATAAAGTGCAGCTCCAAGCTGGTCTGGAGCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'35-38,'35-37,37-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.3),PF127142=TILa=PU(17.5=14.1)
A:
PF127142=TILa=PD(78.9=91.8)
C2:
PF0009420=VWD=PU(50.3=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTCAGCCCGGCTATGTG
R:
CCATCTTGTTGCGTCCTTCCA
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains