GgaEX6046221 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:14263521-14265549:-
Coord C1 exon
chr9:14265341-14265549
Coord A exon
chr9:14264758-14264899
Coord C2 exon
chr9:14263521-14263771
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATACCACAATTTGTGTCCAGGCT
3' ss Score
4.44
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CATTGCCCTGTCCATCCCACAGCCATTACACAGCCTGTGCCTCTGCCTGCCCATCAACATGCAATGACATTTTTGCCTCATCCCTTTGTGAGAAGACAGAATCATGCACAGAGGGCTGTGAGTGTGATGATAATTATGTGCTCAGTAATGACAAGTGTGTTCCTCTCAGCAACTGTGGCTGCAGGGATGATGACAACAATTACTACAGT
Seq A exon
GCTGGGGAGACCTGGATTACTCCACACTGCACCGAAAGATGTCAATGTCAGCAGAATGGTGTCATCAGATGTCAGAGTTACGGATGTGATTCTAAAGAAACCTGCTTGATCAAAAGTGGAAAATACAAGTGCAATCCAACAG
Seq C2 exon
GTTTTGGCAAGTGCCGGATCATAGGCGATCCACATTATATCACATTTGATGGTTTGGTGCACCACTTCCAAGGGAAATACACGTATATTCTGACTCAGACCATCCCTGACCTACCTGATACTCTGACACAGTTCAGCGTCGAAGGCGTGAACTATCCTCTTCGTCTAAACCGACGCATTACTTACTTGAAAGAGATTATCATCAACGTTTACAATCACGAAGTGCGATTCAGGCAAGGCAAGCAGATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.9=14.3)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0009420=VWD=PU(50.6=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGCTGTGAGTGTGATGA
R:
GGATAGTTCACGCCTTCGACG
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]