GgaEX6046221 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12636890-12638918:-
Coord C1 exon
chr9:12638710-12638918
Coord A exon
chr9:12638127-12638268
Coord C2 exon
chr9:12636890-12637140
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATACCACAATTTGTGTCCAGGCT
3' ss Score
4.44
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CATTGCCCTGTCCATCCCACAGCCATTACACAGCCTGTGCCTCTGCCTGCCCATCAACATGCAATGACATTTTTGCCTCATCCCTTTGTGAGAAGACAGAATCATGCACAGAGGGCTGTGAGTGTGATGATAATTATGTGCTCAGTAATGACAAGTGTGTTCCTCTCAGCAACTGTGGCTGCAGGGATGATGACAACAATTACTACAGT
Seq A exon
GCTGGGGAGACCTGGATTACTCCACACTGCACCGAAAGATGTCAATGTCAGCAGAATGGTGTCATCAGATGTCAGAGTTACGGATGTGATTCTAAAGAAACCTGCTTGATCAAAAGTGGAAAATACAAGTGCAATCCAACAG
Seq C2 exon
GTTTTGGCAAGTGCCGGATCATAGGCGATCCACATTATATCACATTTGATGGTTTGGTGCACCACTTCCAAGGGAAATACACGTATATTCTGACTCAGACCATCCCTGACCTACCTGATACTCTGACACAGTTCAGCGTCGAAGGCGTGAACTATCCTCTTCGTCTAAACCGACGCATTACTTACTTGAAAGAGATTATCATCAACGTTTACAATCACGAAGTGCGATTCAGGCAAGGCAAGCAGATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.9=14.3)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0009420=VWD=PU(50.6=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGCTGTGAGTGTGATGA
R:
GGATAGTTCACGCCTTCGACG
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]