DreEX6005248 @ danRer10
Exon Skipping
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26082957-26086013:+
Coord C1 exon
chr7:26082957-26083165
Coord A exon
chr7:26085171-26085315
Coord C2 exon
chr7:26085766-26086013
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGGGTGGTATATGTTTCAGGTG
3' ss Score
7.1
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CTCTCCCGTGCCCACCCAACAGTCACTACTCTGAGTGCACACCTCCATGTCCTCCTACTTGTGCTGACCTCTTCCCCATTTTCTGCCCATTACCACCCAATAGCTGTGTTGAAGGCTGTCAGTGTAATGCAGGTTTTGTGCTAAGTGATGGCAAGTGCGTTCCTCTCTCAAGCTGTGGATGCGTTGACAGCAATGGAGAGTATCACGAC
Seq A exon
GTGGGGGATTCCTGGATAACAGACCGCTGCACACAGAAATGCACCTGCAGCCTTGGAGGACTGTTGACCTGCAATGCCTTTGAATGCAATGAAAACTCAATCTGTGATCTTGACAGCAATGGAGACCGTTACTGCAAACCCGAGA
Seq C2 exon
AATTCGATGACTGCACAATTGCTGGAGACCCTCACTATCGTACATTTGACAAATACAATCACCACTACCAAGGAGCGTATACCTATGTGTTGAGCCAAGACAACAATTTACCCAGCCACCTCACTCCTTTCATGGTCCGCGGCAAAAACCAGAGGCAAGGAGGTATCAGTCGGGTGTCCCTCCTGCGCGAGGTCTTTGTGGACGTGTACGGCATTACTGTCCGCATGCAACAGAATAAGAAAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781-'47-50,'47-49,48-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
A:
PF127142=TILa=PD(78.9=91.8)
C2:
PF0009420=VWD=PU(50.3=94.0)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTTGAAGGCTGTCAGT
R:
GCGGACCATGAAAGGAGTGAG
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]