RnoEX6063838 @ rn6
Exon Skipping
Gene
ENSRNOG00000056032 | AABR07035780.1
Description
NA
Coordinates
chr12:22375267-22377980:+
Coord C1 exon
chr12:22375267-22375484
Coord A exon
chr12:22377432-22377573
Coord C2 exon
chr12:22377736-22377980
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCTCACTTCTGCAGGCA
3' ss Score
10.32
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
CTATGAAGTGCCCCGCCAACAGCCTCCGCACCAACTGCCTCCCTTCCTGTCTACGTTCCTGCTCCAACCCTGATGGCCACTGTGAGGGCACCAGCCACAAAACCCCCTCCACCTGCAGGGAGGGCTGTGTCTGTCGACCTGGCTACCTGCTCGATAAGGACACGTGTGTGCGCAAAGACCAGTGTGACTGCAAAGATATCAAGGGCGACATCATCCCG
Seq A exon
GCAGGCAAGACCTGGATCTCCAGCGGCTGCACCCAGAGCTGTGCTTGCACGGATGGGGTTATTCAGTGCCAGAATTTCATCTGCCCGTCAGGGTCCCACTGTCAGCACAATGATGATGGCAGCAGTGACTGTGCAGCCAACA
Seq C2 exon
AGCTGGAAAAATGTACCATCTTTGGGGACCCCTATTACCACACGTTCGATGGCTTCACCTACCGCTTCCTGGGTCGTATGAACTACTATCTCATAAAGACACTGGACAAGCTCCCAAGAGGGATTGAGCCGCTGATCATGGAGGGGCGCAACAAAATATCCCCCAAGGGGAGCTCAACCTTGCACGAAGTGACCACCATCGTCTACGGCTATAAAATCCAGCTCCAAGAAGGCCTGGGGGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056032-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGCTCCAACCCTGATG
R:
GTTCATACGACCCAGGAAGCG
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]