MmuEX6021824 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137830060-137833083:-
Coord C1 exon
chr5:137832866-137833083
Coord A exon
chr5:137830463-137830604
Coord C2 exon
chr5:137830060-137830304
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCGTCACATCTGCAGGCA
3' ss Score
7.97
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
CTATGAAGTGCCCAGCCAACAGTCTCTACACCCACTGCCTTCCCACCTGTCTACCTTCCTGCTCTAACCCTGATGGCCGCTGTGAGGGCACCAGCCACAAGGCCCCCTCCACCTGCAGGGAGGGCTGTGTCTGTCAACCTGGCTACCTGCTCAATAAGGACACGTGTGTGCACAAAAACCAGTGTGGCTGTAAAGATATCAGGGGCAACATCATCCCG
Seq A exon
GCAGGCAACACCTGGATCTCCAGTGACTGTACCCAGAGCTGTGCCTGCACGGATGGAGTCATCCAGTGCCAGAATTTTGTCTGCCCATCAGGGTCCCACTGCCAGTACAACGAGGATGGCAGCAGTGACTGTGCAGCCAACA
Seq C2 exon
AACTGGAAAGATGTACCATCTTTGGGGATCCCTATTACCTCACGTTTGATGGCTTCACTTACCACTTCCTGGGTCGTATGAACTACTATCTCATAAAGACGGTGGACAAGCTCCCAAGAGGGATTGAGCCCCTGATCATGGAGGGACGTAACAAAATATCCCCCAAAGGGAGTTCAACCTTGCATGAAGTGACCACCATCGTCTATGGCTATAAAATCCAGCTCCAAGAAGAACTAGTGGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'82-84,'82-83,83-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0009420=VWD=PU(50.0=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAAAACCAGTGTGGCTG
R:
ACGATGGTGGTCACTTCATGC
Band lengths:
251-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: