MmuEX6027165 @ mm9
Exon Skipping
Gene
ENSMUSG00000042554 | Zp3r
Description
zona pellucida 3 receptor [Source:MGI Symbol;Acc:MGI:104965]
Coordinates
chr1:132493236-132495822:-
Coord C1 exon
chr1:132495737-132495822
Coord A exon
chr1:132495384-132495578
Coord C2 exon
chr1:132493236-132493418
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTTACTTGTCAAAGTTG
3' ss Score
2.94
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTATCTTCTGATTGGCTCAGCAACTAGTCGGTGTGAGGTCCAAGGTAAAGGAGTTGACTGGAGTGATTCTCTCCCAGAATGTGTAA
Seq A exon
TTGCCACGTGTGAGCCCCCTCCACCCATCAGCAATGGGAAGCACAGTGGGAGAGATGATGACCTGTACACGTTTGGCTCTGTAGTCATCTACAATTGTGATCCCACCTTCACACTCCTTGGCAATGCCTCCATTGTCTGCACTGTGGTGAACAGGACAGTAGGTGTTTGGAGACCACACCCTCCTGCCTGTCAAA
Seq C2 exon
AAATCGTCTGCCATCGGCCGCAGATTCTGAAGGGATACTTGGCCCCTGGATTTCGACAGTTCTATGCGTACAGAGACGCTCTTGAGATCCGATGCAAGAAGGGTTTTATCCTCAGAGGCAGCAGTGTGATCCACTGTGAAGCAAATGGCGAGTGGTTTCCTTCTATCCCCACCTGTGAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042554-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
PF0008415=Sushi=WD(100=92.4)
C2:
PF0008415=Sushi=WD(100=90.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTAGTCGGTGTGAGGT
R:
GGGTTCACAGGTGGGGATAGA
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: