MmuEX6027165 @ mm10
Exon Skipping
Gene
ENSMUSG00000042554 | Zp3r
Description
zona pellucida 3 receptor [Source:MGI Symbol;Acc:MGI:104965]
Coordinates
chr1:130596659-130599245:-
Coord C1 exon
chr1:130599160-130599245
Coord A exon
chr1:130598807-130599001
Coord C2 exon
chr1:130596659-130596841
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTTACTTGTCAAAGTTG
3' ss Score
2.94
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTATCTTCTGATTGGCTCAGCAACTAGTCGGTGTGAGGTCCAAGGTAAAGGAGTTGACTGGAGTGATTCTCTCCCAGAATGTGTAA
Seq A exon
TTGCCACGTGTGAGCCCCCTCCACCCATCAGCAATGGGAAGCACAGTGGGAGAGATGATGACCTGTACACGTTTGGCTCTGTAGTCATCTACAATTGTGATCCCACCTTCACACTCCTTGGCAATGCCTCCATTGTCTGCACTGTGGTGAACAGGACAGTAGGTGTTTGGAGACCACACCCTCCTGCCTGTCAAA
Seq C2 exon
AAATCGTCTGCCATCGGCCGCAGATTCTGAAGGGATACTTGGCCCCTGGATTTCGACAGTTCTATGCGTACAGAGACGCTCTTGAGATCCGATGCAAGAAGGGTTTTATCCTCAGAGGCAGCAGTGTGATCCACTGTGAAGCAAATGGCGAGTGGTTTCCTTCTATCCCCACCTGTGAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042554-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
PF0008415=Sushi=WD(100=92.4)
C2:
PF0008415=Sushi=WD(100=90.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTAGTCGGTGTGAGGT
R:
GGGTTCACAGGTGGGGATAGA
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types