RnoEX0102210 @ rn6
Exon Skipping
Gene
ENSRNOG00000025862 | Zp3r
Description
zona pellucida 3 receptor [Source:RGD Symbol;Acc:727846]
Coordinates
chr13:47302662-47305664:-
Coord C1 exon
chr13:47305579-47305664
Coord A exon
chr13:47305233-47305427
Coord C2 exon
chr13:47302662-47302844
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTTACTCATCAAAGTTG
3' ss Score
2.93
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTATCTTCTGATTGGCTCAGCAACTAGCCGGTGTGAGGTCCAAGGTAAAGGAGTTAACTGGAGTGATTCTCTCCCAGAATGTGTAA
Seq A exon
TTGCCACATGTGAGCCCCCTCCAGTCATCAACAATGGGAAGCACAGTGGTAGAGAGGAAGACCTGTACACATACGGCTCCATGGTCATCTACAGTTGTGATCCCAGCTATACACTCTTTGGCAATGCCTCCATTGTCTGCACTGTGGTGAACAAAACAGTAGGTGTTTGGAGTCCACACCCTCCTGCCTGTGAAA
Seq C2 exon
AAATCGTCTGTCATCAGCCACAGATTCCAAAGGGAGAGTTGGTCCCTGGATTTCGACATTTCCATACTTACAAAGACGCTCTTGAGATCAGATGCAAGAAGGGCTTTGCTCTCAGAGGCAACAGCGTGATCCACTGTGAGGCTAATGGCGAGTGGTTTCCTTCGGTCCCCACCTGTGAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025862_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
PF0008415=Sushi=WD(100=92.4)
C2:
PF0008415=Sushi=WD(100=90.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTGGCTCAGCAACTAGCC
R:
CGAAGGAAACCACTCGCCATT
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]