MmuEX6027167 @ mm9
Exon Skipping
Gene
ENSMUSG00000042554 | Zp3r
Description
zona pellucida 3 receptor [Source:MGI Symbol;Acc:MGI:104965]
Coordinates
chr1:132479426-132488138:-
Coord C1 exon
chr1:132487941-132488138
Coord A exon
chr1:132479977-132480177
Coord C2 exon
chr1:132479426-132479515
Length
201 bp
Sequences
Splice sites
3' ss Seq
CACCTCTTTTAATCTCACAGGGA
3' ss Score
8.92
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGTTGTACCAATATACCAGATATTTCCTATGCTTCCTGGGAGGGATATAAGTTTCCATTAAGAAATTTTGAAGTATTTGAAATTGGGGCCAAATTGAAATACCAGTGCAAGCCTGGTTATCGAGCAAGTCTTAACGATCCCCAGACTGTGACTTGTCAGGAAAATCTGACTTGGTCATCTACTAATGGATGTGAAA
Seq A exon
GGATATGTTGCCCAACACCAGATATGGAGAAAATCAAAATTGTGAGTGAAAGGAGAGATTTCACTGGCACATGCATCTATGCCTACGGAGACTATGTTTTCTACATTTGTAATGAAGGCTCTTACCCTATGTCTACGGATGGAAGGAGTTCATGTCAAGCAGATGGAAAGTGGGACCCCGCAATACCATCATGTCAGGCAG
Seq C2 exon
ACTCAGGCCTGCAAAACCGTCTTGCTCTTTTCACCTTCCCAAACATATCAGAAACCAATGTGACAAACAAAACCTATCTATTTGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042554-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(95.5=95.5)
A:
PF0008415=Sushi=PD(3.0=2.9),PF0008415=Sushi=WD(100=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATATTTCCTATGCTTCCTGGG
R:
TGACCAAATAGATAGGTTTTGTTTGT
Band lengths:
269-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: