MmuEX6027818 @ mm9
Exon Skipping
Gene
ENSMUSG00000026398 | Nr5a2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:MGI Symbol;Acc:MGI:1346834]
Coordinates
chr1:138845299-138857004:-
Coord C1 exon
chr1:138856804-138857004
Coord A exon
chr1:138848679-138848741
Coord C2 exon
chr1:138845299-138845436
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCACTCCTCCCTCAGCGT
3' ss Score
8.85
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AACTTTCACTAAGGAAATGAGGGTTACTGTAGTCTGAGGTTTCCTTCCCAAAGTCACAAAATATGACAAGCTGCAATCTTTCTCACATTCAATGATTTCTGCTGTAAGCCAAAGGACTGCCAATAATTTCGCTAAGAATGTCTGCTAGTTTGGATACTGGAGATTTTCAAGAATTTCTTAAGCATGGACTTACAGCTATTG
Seq A exon
CGTCTGCACCAGGGTCAGAGACTCGCCACTCCCCCAAACGTGAGGAACAACTCCGGGAAAAAC
Seq C2 exon
GTGCTGGGCTTCCGGACCGACACCGACGCCCCATTCCCGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCCAGGACTGGTCCGATCGCATGGGGAACAGGGGCAGATGCCAGAAAACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026398-'0-2,'0-1,4-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=1.000 C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTAAGCCAAAGGACTGC
R:
GAATGGGGCGTCGGTGTC
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: