MmuEX6027818 @ mm10
Exon Skipping
Gene
ENSMUSG00000026398 | Nr5a2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:MGI Symbol;Acc:MGI:1346834]
Coordinates
chr1:136948722-136953630:-
Coord C1 exon
chr1:136953494-136953630
Coord A exon
chr1:136952102-136952164
Coord C2 exon
chr1:136948722-136948859
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCACTCCTCCCTCAGCGT
3' ss Score
8.85
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AATTCGTTTCTCTTTTCCCTTGGGCTGTCACTTCCCTTCAGGGGAAGAATACTTTAAAACAGAGATCTAGGACTCTTCCCGGGCTTCAGAACGTAGTATCATCAGTTCAATACAACTAGATACCTAGGACCGGAAAG
Seq A exon
CGTCTGCACCAGGGTCAGAGACTCGCCACTCCCCCAAACGTGAGGAACAACTCCGGGAAAAAC
Seq C2 exon
GTGCTGGGCTTCCGGACCGACACCGACGCCCCATTCCCGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCCAGGACTGGTCCGATCGCATGGGGAACAGGGGCAGATGCCAGAAAACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026398-'3-5,'3-2,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.698
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTAGGACTCTTCCCGGGC
R:
ACTTTGGGCAGCATGACAAGG
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types