RnoEX0060880 @ rn6
Exon Skipping
Gene
ENSRNOG00000000653 | Nr5a2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:RGD Symbol;Acc:68353]
Coordinates
chr13:53859265-53870428:-
Coord C1 exon
chr13:53869963-53870428
Coord A exon
chr13:53862452-53862514
Coord C2 exon
chr13:53859265-53859402
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCACTCCTCCTTCAGCAC
3' ss Score
8.79
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TTCTGAGTTAATCATTTCTTTGCCATTATCTGCCCAGAGTTCTTATCTCTCTTGCTGTCACTTTATAACAGGGTCCTCTTATCAACCGGCACAGGGTCATGTGACCAGTCAAAGCCTATTGAAAGCTTCCTTTCTTGTGATTAGAAACCATCATGAAACTGGAGCCATGGTTTACAGCAGGTCACGAATGCTGGAAAAAGTACAGAGTCCAGGAGAGCATGGCTTGGGCCTTTCTGAATTCTGTTTTTTTCCCCCTTTTTTTCTTAACTTTCACTAAGGAGATGAGGGTTACGGTAGTCTGAGGCTTCCTTCCCCAGGTCACAAAATATGACAGGCTGCAACCTTCCCCACGTTCAATGATTTCTGCAGTAAGCCAAAGGACTGCCAATAATTTCGCTAAGAATGTCTGCTAGTTCGATTACTGGGGATTTTCAAGACTTTCTTAAGCATGGACTTCCAGCTATTG
Seq A exon
CACCTGCACCAGGATCAGAGACTCCACACTCCCCCAAACTTGAGGAAAAACACCGGGAAAAAC
Seq C2 exon
GTGCTGGGCTTCCGGACCGACACCGACGCCCCATTCCCGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCTCAGGACTGGTCCGATCGCATGGGGAACAGGGGCAGATGCCGGAAAACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000653_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=1.000 C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTAGTTCGATTACTGGGGA
R:
GAGGCTTCCGTCTCCACTTTG
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]