RnoINT0103012 @ rn6
Intron Retention
Gene
ENSRNOG00000000653 | Nr5a2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:RGD Symbol;Acc:68353]
Coordinates
chr13:53859265-53862514:-
Coord C1 exon
chr13:53862452-53862514
Coord A exon
chr13:53859403-53862451
Coord C2 exon
chr13:53859265-53859402
Length
3049 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TCTGTGCTGCCCGTGTTCAGGTG
3' ss Score
10.6
Exon sequences
Seq C1 exon
CACCTGCACCAGGATCAGAGACTCCACACTCCCCCAAACTTGAGGAAAAACACCGGGAAAAAC
Seq A exon
GTGAGTGTGGCCTTGAATTTCCAACAAAACCCAGCTCCTGTAGAACCCCCACCCCCACCCCTGTGTGTGTGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGGAGGGAGTAAGAGAGGGAGGGAGAAAGAGACGTCTCACTATGTAGAACTGATTGTCCTGGACTAACTATAGAGACCTTACCTACACCCCTGACATAGACCTTGCTGGAATCAGAACTCAGAGAGATCCTCCTGCCTCTGCCTTCCAAGTGCTGGGTAAAGGTGGGAGGTGAAAGGCAAAAAGGCAACTTGTTTTTTAGGTCCCTAGCCTTTGGGGCCCCTTCTTCAGTTGGCTGCTAGACAGAGGCGCTGCCTAGGCTAGATAGATCTTCAAAGCAAGGGAAAGCCAGGGATAACCAGGGACACTACTTAAATGTCAAAGGCTGGATTCTTTTAGACCTTGTCTTGGACACCTATTCCCTGTCTCCCACTCCCTCCTCATCTATGAGGCTTTTTCTGTGGGAAGAGAAAGGAAAGCCCCACTTGACCTTTGGCACTCATCACTCTGTCTTTGGAAGATGCGCTGGGAGAGGGGGTGTGCGCAGATTGGGCTGGAAAGCCACTAACTTGACCTAAGTATGTCCTTTCTGGCTCAGGAGCTGGTGCTACTGAGCATAACCGCAAAGTTCACCTCCTTGGGTCAGCCTCTGGTTCTGGCCAGCTTTCTAGCCACAGTCACAAGGCTCTTCAACTCTGGGAGCCACTTCTTGCAAAAAAAAAAAGGGGGGGGGCAGACCAAGAAGCTGGAGTTTCTGCATCCTTTCTTGACTGGTGGGTAGGAAGATGATAGATAAAGACCACTATGAGCCCTGAGAACCGCAGTGAGAGTAGGAGTTGCTCTTAAAGCTTTGAAATAAACTGATGGAGTTTGCCTGGACTCTCAAGTAAAGCGGGCAGTAATGGGTTGAGCCTGGGGACTTACTCCCTTCCTGAACTATGTAAGAAACGTATTTGTAATTCAAAGTGATGGCTTAAACAAGGGGCAATACTGAAAATGCATTGACATTGTTACTCGATACTAACGTGAAAGCCTGAGCTTTAATAGTCACTAATATAGGCAAATTCAGCCTGCTCCACCACACAAACTAATTGGCCGATCCCCCCTCCCAATATCTGTGGCCAGAAGGGACATGCTTAGGCCACGTTAGAAAGCTAAAGATGCTGCGAACACTAGACATTAAATGAAATCATTTAGATTCTGCAGTATATGTTTTAAAGCAAAAAGAAAGTCAATGTATTTGAACTGCTAGCCATCAGTGGATAGCCTACCTCATATAAAAGTATATGCGGTGATTTGAAATAATTCATTAGATACTAGACTGGGCAGTTTATGTGATCTCTGTGCCATTTAAATAGAATAAATTCAGATCTTTTGAGATTCAAATCCACCCCCTTGTGGGTGGACTCTGATAATTACCCAGTCGCACAGCAGACCGCAGCTACGAAGCTTTGCGTGCGTCCAGGAGGCTGGGAAGAATGTTTTTCATCTTGTTGGGATGAGATCTGAAAACTTTAAAGATGAAGCTGGGCTAGTGGCCTAAGAGCTTGCATAACAGATGGTTCTTTATAACTTAAAAAAAAGGCTGAGCCCCGTGCGGATTGGGTGGGGGGCATGGGGCCACCAAAGGGACTGTAGAATATGGAAGGAAAGCAAGGGCTGAACGTTCTGTCCAAACTCGGCTCTGACTAAAAATTCAATAGTCACCAAGATAATCTTGGACCCAAGTGTTCTTGTCAGAAGCAGTGAAGGTGGGTTGGTGAGCGGCGTGGGGAAGCAGAAGTGGCTGTCTTTTACTCTAATTCCGTGGAAAAGGAGAGAAACCTCAGTGACTTAGCTGTCCCCAAAGTAAGCTTTAGCCCCTGGAGTCTTTAGGGCACAGCCACTCAGTTGTGCCTCTCTGATAGCTGCATTCAGAGAGGACCTTTGATAGTGGGGCCAACTACCCTCCATTTATGAACTTAACATCCTTTTTCTCTTCTGGGTGTTTTAAGTGGGCTGTTCACTCCACAGGTCTCCTTCCCCACACTCACACAAGGACCACCTACACCCACACTCTCCAGACCTTCTTGTTTTTCTTCAGTTCTTTGAAATGGCCAGTCTCAGCCCTCACCCTGGTCACTTCACTTAGACACAGGTCGCTCCTCAATAGCTGAGAAACCTAGTAGCATTTACATCCCCCACTCACCCCTCCCGTCCCAGGCCAGGGTGGGGTGGAGTAGATTAAGGCGGGGTGAAGAGGTTGGGGCAGGCACCGAGGCCGAAGCTTCCTTATTGGCTAGTGGCTAGTGTCCGACCTGAGTCCGGAACCTGCGTCCCATTCACTGTCTTCACCTCTCACCTCCCCCCCTGACACCCCCCTTCCAGCTTACCTCCCCTCGACAACTGGTCTTCCCCTCTCCTGGCTCTGTCACCGTCCGGGCTGGAAAGGGTTGCTCTCCACCCTAGAGCAGTGGGAGGTTGGAACTTCAGAACTCCACACTTGTGATAGTCGGAAGAGAAGGAGCTGAAGGAGAGATAGGAGGAAGGGGCGGAGAGGAGAGAAGAGGACTGTAGAGGAGGGGAGAGAAGTGAGGCGAGCGAAAGAGAGAGAGAGAGACCCCTGCTGATCCTGAGCCAGAGGGCGGGTGCAGGGAGGGGAAGGAGTCCAGGAGCCGTTCAGCCGCTGCAGCAGTAGCAGCTGGCGGCCGCCTCTGCTGCCCTCCGGAGCGCGGCGCGCACAGATCGCTGTCCGGGGCAGCAGCGCTTTTGCTGTCGCTGCCTCCGCCCTGGCGGAGCGGACCTGGGCAGCTGAAAGCGGTCTTCTTAGTCAGGCGTGGTAGCCTGGATCTCCTGCGCGCAGCTCACGGACAGCTTTGAAGCTGCTGAACCGGACAGGGCTCCGAGGTCCTGCCCGGCAGCTCCGGCAAGCGGGTGGGTGAGCGGGCACGCTGATCACCCCTTGTCTTTCCGCTGGAGTTGAATCTGTGCTGCCCGTGTTCAG
Seq C2 exon
GTGCTGGGCTTCCGGACCGACACCGACGCCCCATTCCCGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCTCAGGACTGGTCCGATCGCATGGGGAACAGGGGCAGATGCCGGAAAACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000653:ENSRNOT00000000812:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]