MmuEX6027916 @ mm10
Exon Skipping
Gene
ENSMUSG00000026365 | Cfh
Description
complement component factor h [Source:MGI Symbol;Acc:MGI:88385]
Coordinates
chr1:140088658-140100984:-
Coord C1 exon
chr1:140100808-140100984
Coord A exon
chr1:140098870-140099046
Coord C2 exon
chr1:140088658-140088840
Length
177 bp
Sequences
Splice sites
3' ss Seq
TACTTTATTTTGTTCTTTAGATA
3' ss Score
8.7
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
AAACGGATTGTGACGTTTTACCCACAGTTAAAAATGCCATAATAAGAGGAAAGAGCAAAAAATCATATAGGACAGGAGAACAAGTGACATTCAGATGTCAATCTCCTTATCAAATGAATGGCTCAGACACTGTGACATGTGTTAATAGTCGGTGGATTGGACAGCCAGTATGCAAAG
Seq A exon
ATAATTCCTGTGTGGATCCACCACATGTGCCAAATGCTACTATAGTAACAAGGACCAAGAATAAATATCTACATGGTGACAGAGTACGTTATGAATGTAATAAACCTTTGGAACTATTTGGGCAAGTGGAAGTGATGTGTGAAAATGGGATATGGACAGAAAAACCAAAGTGCCGAG
Seq C2 exon
ACTCAACAGGGAAATGTGGGCCTCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACCAGTATATGAACCATTATCATCAGTTGAATATCAATGCCAGAAGTATTATCTCCTTAAGGGAAAGAAGACAATAACATGTAGAAATGGAAAGTGGTCTGAGCCACCAACATGCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026365_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.052
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=88.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCTCAGACACTGTGACA
R:
AAGCATGTTGGTGGCTCAGAC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types