MmuEX6028684 @ mm9
Exon Skipping
Gene
ENSMUSG00000086277 | 4930558K02Rik
Description
RIKEN cDNA 4930558K02 gene [Source:MGI Symbol;Acc:MGI:1922618]
Coordinates
chr1:163887224-163898127:-
Coord C1 exon
chr1:163898042-163898127
Coord A exon
chr1:163894953-163895037
Coord C2 exon
chr1:163887224-163887307
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCATTGCTCGCCTAGGTA
3' ss Score
6.77
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTTTTGTTCCAAAGTTTGACAAGATTCCTTGGCTGAGTGAGGCCAGCCTGGTAAACAAACCATTGATCCTGAGCATCCCCAGAAG
Seq A exon
GTACCACTCCTCCTTTGTTCTGACTTCGTACAAGAAGGATATGTATTTGCCACACTTGCTTGAAAATCCAGACTTCCTATCAAAG
Seq C2 exon
GCTAGAAAGAATGAGCATGAAAACCTGTCGCCCAGAAACAAGCAACTGTGCGCTACATGTCGAGGATATCAAAAAGTGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086277-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.464
Domain overlap (PFAM):
C1:
PF150811=DUF4548=PU(11.5=65.5)
A:
PF150811=DUF4548=FE(17.0=100)
C2:
PF150811=DUF4548=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGTTCCAAAGTTTGACAAGA
R:
CGTTTTCACTTTTTGATATCCTCGAC
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: