RnoEX0072374 @ rn6
Exon Skipping
Gene
ENSRNOG00000026523 | RGD1309106
Description
similar to hypothetical protein [Source:RGD Symbol;Acc:1309106]
Coordinates
chr13:79875742-79885697:-
Coord C1 exon
chr13:79885612-79885697
Coord A exon
chr13:79883043-79883127
Coord C2 exon
chr13:79875742-79875825
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCATTGATTGCCTAGGTA
3' ss Score
6.55
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
ACTTTTGTTCCAAAATTTGACAAGATTCCTTGGCTTAGTGAGGCCAGCGTGGTAAACAAGCCGTTAATACTCAGCATCCCTAGAAG
Seq A exon
GTACCGCTCCTCCATTGTTCTGACTTCATACAAGAAGGATATGTATTTGCCACACTTGCTTGAAGATTCAGACTTCATATCGAAG
Seq C2 exon
GCTAGAAAGAACGAGCATGAAAACCTGTTACCCAGAAACAAGCAGCTGTGCTCCACATGTCGAGGATATCAAGAAATGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026523-'13-10,'13-8,16-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF150811=DUF4548=PU(11.5=65.5)
A:
PF150811=DUF4548=FE(17.0=100)
C2:
PF150811=DUF4548=FE(16.4=100)
Main Skipping Isoform:
ENSRNOT00000035815fB11819
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTCCAAAATTTGACAAGATTCC
R:
CGTTTTCATTTCTTGATATCCTCGAC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]