MmuEX6028814 @ mm9
Exon Skipping
Gene
ENSMUSG00000026582 | Sele
Description
selectin, endothelial cell [Source:MGI Symbol;Acc:MGI:98278]
Coordinates
chr1:165983096-165984125:+
Coord C1 exon
chr1:165983096-165983284
Coord A exon
chr1:165983667-165983855
Coord C2 exon
chr1:165983949-165984125
Length
189 bp
Sequences
Splice sites
3' ss Seq
GAATGGCTTCTCTCTTCTAGCTG
3' ss Score
7.98
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CTGTCCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCAAAATGGGTCCAGTTGTGAGTTCTCCTGCGAAGAAGGATTTGAACTGAAGGGATCAAGAAGACTTCAGTGTGGTCCAAGAGGGGAATGGGATAGCAAGAAGCCCACGTGTTCAG
Seq A exon
CTGTGAAATGTGATGATGTCCCTCGGCCCCAGAATGGCGTCATGGAGTGTGCTCATGCTACTACTGGAGAATTCACCTACAAGTCCTCATGTGCCTTTCAATGCAATGAGGGCTTTAGCTTGCATGGCTCAGCTCAACTTGAGTGCACATCTCAGGGAAAGTGGACCCAGGAAGTCCCCTCCTGCCAAG
Seq C2 exon
TGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATGAGCTGCAGCGGAACAGCAGTTTTCGGCACAGTGTGTGAGTTTACATGTCCTGATGATTGGACACTCAATGGATCTGCAGTTCTGACGTGTGGTGCCACGGGACGCTGGTCTGGGATGCCGCCTACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026582-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.2)
A:
PF0008415=Sushi=WD(100=92.2)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGAAGCCTTATCTGCGC
R:
CTGTGCCGAAAACTGCTGTTC
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: