MmuEX6028830 @ mm10
Exon Skipping
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:164130079-164134052:+
Coord C1 exon
chr1:164130079-164130264
Coord A exon
chr1:164132138-164132323
Coord C2 exon
chr1:164133867-164134052
Length
186 bp
Sequences
Splice sites
3' ss Seq
GCTGCCATTTTCCCCTTCAGCTA
3' ss Score
8.44
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTGTGCAATGTCAGAGCCTGGAAGCCCCTCCCCATGGAACCATGGCCTGTATGCACCCAATTGCTGCCTTTGCCTACGACTCCAGCTGTAAATTTGAGTGCCAGCCTGGATATAGAGCGAGGGGCTCCAACACACTCCACTGCACTGGCTCTGGTCAGTGGAGTGAACCACTGCCAACCTGTGAAG
Seq A exon
CTATTGCGTGTGAACCTCCGGAGATCCCCATCCATGGGAGCATGGACTGCGTCCCATCTACAGGAACCTTTGGGTACAACAGCAGCTGCACTTTTCTCTGTGCAGAGGGGTTCGTGCTGAAGGGAAATGATGCCATTCAGTGTGCTGACTCCGGGCAGTGGACAGCCCCAGCCCCATTCTGTGAAG
Seq C2 exon
CGTTGCAATGTCCAGAGTTTCCGGTTCCCAGTAAAGCCCAGGTGAACTGCTCGGATCCCTTCGGTACCTTGACGTACCAGTCAGTCTGCAGCTTTTCCTGTGATGAAGGCTCGCTCTTGGTGGGAGCAAGTGTGATAAGATGCCTGGCTACTGGACACTGGAATGGGGCTCCTCCCGAATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580-'1-17,'1-6,7-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
PF0008415=Sushi=WD(100=92.1)
C2:
PF0008415=Sushi=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCCTACGACTCCAGCTG
R:
CACACTTGCTCCCACCAAGAG
Band lengths:
253-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types