MmuEX6031553 @ mm10
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10797676-10799541:-
Coord C1 exon
chr19:10799194-10799541
Coord A exon
chr19:10798316-10798627
Coord C2 exon
chr19:10797676-10797978
Length
312 bp
Sequences
Splice sites
3' ss Seq
TAAAACCCTCCCACCTCCAGAGA
3' ss Score
7.76
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG
Seq A exon
AGAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAG
Seq C2 exon
AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670-'9-11,'9-9,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.3)
A:
PF0053013=SRCR=WD(100=92.4)
C2:
PF0053013=SRCR=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGCTGAACTGTGGTGATT
R:
GACAGAGCACTTTGGCCTCAG
Band lengths:
348-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types