BtaEX6102532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37925833-37927954:+
Coord C1 exon
chr29:37925833-37926183
Coord A exon
chr29:37926736-37927047
Coord C2 exon
chr29:37927652-37927954
Length
312 bp
Sequences
Splice sites
3' ss Seq
CATTCTCCTCCCATCCCCAGATA
3' ss Score
10.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGAGCGACTCCAGGTCCGTCTGGTGAATGGGAGCACCCGCTGCGAAGGGACAGTGGAGGTCTGGTTCCAGCAGTCGTGGCAGCCCGTGTGCGGGGCGCTCTGGGAGCTCGATGCCTCCCACGCCCTGTGCAGCTCGCTGGACTGTGGCCGGGCTCACCCGCTGGAACTGCCGGTCCTGCAGACCCCGGAGCCGCCGGCCTGGGCAGCCGCGGGGAACGCCAGCTGGGCCCCGAACACCACAAGTGTCCTGGCCCCTGCCGTCCAGTGCAGCGGCCCCGAATGGCTGAGCTGCAAGGTGGTGGAGCGCGACTGCCGTAGCGACGAGTGGCCTGCCCAGGTCAACTGTACAG
Seq A exon
ATAAACGCGATTTGAAATTGGTGGGTGGTGGCAGCCCATGTGAGGGCCGCGTGGAGATGCTGGAGCACGGCCAGTGGGGTTCGGTGTGTGACGACACATGGGACCTGGAGGATGCTCACGTGGTGTGCCGGCAGCTGGGCTGCGGCTGGGCCGTCCAGGCCCTGCCCGGCTTGCACTTTGCCCCTGGCCAAGGACGCATCCACTGGGACCAAGTGAACTGCACCGGGTTGGAGACCTACCTGTGGCACTGCCCGGGGCTGCCCGGAAATGGGTACTGTGGCCACAAGGAGGATGCCGGAGTGGTGTGTTCAG
Seq C2 exon
AGCACCAGTCCTGGCGCCTGACCGGGGGCACTGACCCCTGTGAGGGGCAGGTGGAGGTGTACTTCCGAGGGGTCTGGAACACAGTGTGTGACAGTGAGTGGTACGACTCAGAGGCCAACGTGCTCTGCCAGGACTTGGGCTGTGGGACCGTGGCCCGGGTGCCCAAGGGGCTGCCCCACTCCTTGTCGGGCAAGATGTTCTACTCATGCAAGGGAAAGGAGTCCACCCTCTCCAAATGCTTCTGGCGGTTCAACAACTCCAACCTCTGCAGACAGTCCCAGGCAGCCAGGGTCCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367-'2-4,'2-3,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.4)
A:
PF0053013=SRCR=WD(100=92.4)
C2:
PF0053013=SRCR=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCTGAGCTGCAAGGT
R:
ACTGTCTGCAGAGGTTGGAGT
Band lengths:
349-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]