MmuEX6034658 @ mm9
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16710508-17216823:-
Coord C1 exon
chr8:17216607-17216823
Coord A exon
chr8:17027225-17027337
Coord C2 exon
chr8:16710508-16710702
Length
113 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCTTCTAAATCCAGGCT
3' ss Score
6.41
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTCAGAACTGTGGTGGCCTGGTACAGGGACCTAATGGCACCATTGAAAGTCCTGGCTTTCCTCATGGGTACCCCAACTATGCCAACTGCACCTGGATCATTATTACTGGGGAGCGCAACAGGATTCAGCTATCCTTCCATACCTTTGCCCTAGAGGAGGACTTTGACATTTTATCTGTCTATGATGGACAGCCCCAGCAAGGGAACTTGAAAGTGAG
Seq A exon
GCTGTCAGGATTCCAGCTGCCTTCCTCCATCGTGAGCACCGGGTCGCTCCTCACGCTCTGGTTCACCACGGACTTTGCAGTGAGCGCACAGGGTTTCAAGGCCATGTACGAAG
Seq C2 exon
TTTTACCTAGTCACACGTGTGGAAACCCTGGGGAGATACTGAAAGGAGTTCTCCACGGAACGAGGTTCAACATAGGCGACAAGATCAGGTACAGCTGTCTCTCCGGCTACATCTTGGAAGGTCACGCCATTCTGACTTGCATTGTCAGCCCTGGGAATGGTGCATCCTGGGACTTCCCAGCTCCTTTCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'3-8,'3-5,5-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(65.1=94.5)
A:
PF0043115=CUB=PD(34.0=92.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATTGAAAGTCCTGGCT
R:
GAACCTCGTTCCGTGGAGAAC
Band lengths:
249-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: