DreEX6059998 @ danRer10
Exon Skipping
Gene
ENSDARG00000044414 | csmd1a
Description
CUB and Sushi multiple domains 1a [Source:ZFIN;Acc:ZDB-GENE-050417-402]
Coordinates
chr13:6289800-6452219:+
Coord C1 exon
chr13:6289800-6290016
Coord A exon
chr13:6349925-6350037
Coord C2 exon
chr13:6452025-6452219
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTGTTTCATTTCAGGTT
3' ss Score
10.79
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTCAGACTTGTGGCGGCCTTATACAAGGTCTCAATGGAACTATAGAGAGTCCTGGCTTTCCCCATGGCTACCCCAACTATGCCAACTGTACATGGATCATAGTCACTGGAGAGCGGAATAGGATACAGTTGTACTTCCACACCTTCGCTCTGGAGGAGGACTTTGACATCGTCTCCATCTATGATGGACAACCACAGCCAGGCAACCTGAAGATGAG
Seq A exon
GTTGTCTGGCTTCATGTTGCCATCACCTATCGTAAGTTCGGGGTCCATTTTGGCACTGTGGTTTACTACAGATTTTGCAGTCAGTGCCCAAGGATTTAAAGCAATCTATGAAG
Seq C2 exon
TTCTGCCAAGTCACACATGTGGAAACCCAGGGTTGATACCCAGAGGAATTATCCATGGGACAAGGTACAACGTTGGTGACAAGATCCGCTACAGTTGTGTAATGGGATATGTTTTAGAGGGGCATGGAGTACTCACCTGCATAGTGAGCCCAGGAAGTGGAGCATCGTGGGATTTCCCAGTACCATTTTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044414-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(65.1=94.5)
A:
PF0043115=CUB=PD(34.0=92.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCTCTGGAGGAGGACTTT
R:
GGAAATCCCACGATGCTCCAC
Band lengths:
251-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]