BtaEX6106338 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1212523-1245397:-
Coord C1 exon
chr27:1245301-1245397
Coord A exon
chr27:1234972-1235076
Coord C2 exon
chr27:1212523-1212641
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCCTGTGTCCCTTCCCGCAGGTA
3' ss Score
13.51
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ATTCAAGTGATCAGCTTTGCCACGGAGCAGAACTGGGACTCTCTGGAGATTTATGACGGTGGTGACGCGAGCGCACCGAGGCTGGGGAGCTTTTCAG
Seq A exon
GTACCACGGTGCCAGCGCTGCTCAATAGCACATCCAACCAGCTCTACCTGCACTTCCAGTCAGACATCAGTGTGGCCGCTGCTGGCTTCCACCTGGAGTACAAAA
Seq C2 exon
CCGTGGGCCTCGCGGCTTGCCAAGAGCCAGCCCTTCCCAGTAACGGCATCAAAACTGGAGACCGATACATGGTGAATGATGTGCTGTCCTTCCAGTGCGAGCCTGGGTACACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'34-35,'34-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(57.9=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGATCAGCTTTGCCACGG
R:
CTGCAGCGTGTACCCAGG
Band lengths:
212-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]