GgaEX6032054 @ galGal3
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
NA
Coordinates
chr3:92867672-92879010:+
Coord C1 exon
chr3:92867672-92867768
Coord A exon
chr3:92872783-92872887
Coord C2 exon
chr3:92878892-92879010
Length
105 bp
Sequences
Splice sites
3' ss Seq
CAAAACTTTTATTTTTCCAGGTA
3' ss Score
8.75
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
ATCCAAGTCATCAGCTTTGCCACTGAACATAACTGGGACTCTCTTGAAATATATGATGGTGGAGATATGACAGCACCACGTCTTGGGAGTTTTTCGG
Seq A exon
GTACAACTGTGCCAGCGTTGTTGAATAGCACTTCCAATCAACTTTATCTACATTTTCACTCTGATATTAGTGTAGCCGCAGCTGGTTTCCACCTGGAATACAAAA
Seq C2 exon
CTGTAGGCCTTGCTGCCTGTCCAGAACCAGTAATTCCTAGCAATGGGATCAAATCAGGAGATAGATATATGGTGAATGATGTTCTGTCATTTCAGTGTGAACCAGGGTATACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(58.9=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTCATCAGCTTTGCCA
R:
ATGTATACCCTGGTTCACACTGA
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]