MmuEX6034691 @ mm9
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16037190-16069050:-
Coord C1 exon
chr8:16068954-16069050
Coord A exon
chr8:16058663-16058767
Coord C2 exon
chr8:16037190-16037308
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTAACTCTTTCCTGTGTAGGTA
3' ss Score
10.83
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
ATCCAAGTGATCAGCTTTGCCACAGAGCAGAACTGGGACTCCCTGGAGATCCATGATGGAGGAGACATGACGGCCCCGAGACTGGGCAGCTTCTCAG
Seq A exon
GTACCACAGTGCCTGCACTGCTGAACAGCACCTCCAACCAGCTCTGCCTGCACTTCCAGTCGGACATCAGTGTTGCTGCCGCCGGCTTTCACCTGGAGTACAAAA
Seq C2 exon
CGGTGGGCCTGGCTGCGTGCCAGGAACCTGCTCTCCCGAGCAATGGCATCAAGATAGGAGACCGGTACATGGTGAACGATGTGCTGTCCTTCCAGTGTGAACCTGGGTATACCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'43-48,'43-47,44-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(58.9=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTGATCAGCTTTGCCA
R:
GCAAGGTATACCCAGGTTCACA
Band lengths:
213-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: