HsaEX6079426 @ hg38
Exon Skipping
Gene
ENSG00000183117 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr8:3162159-3187965:-
Coord C1 exon
chr8:3187869-3187965
Coord A exon
chr8:3181110-3181214
Coord C2 exon
chr8:3162159-3162277
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATCTGCATTGTTTCTTACAGGCA
3' ss Score
9.53
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATCCAAGTGATCAGTTTTGCCACGGAGCAGAACTGGGACTCCCTTGAGATCCACGATGGTGGGGATGTGACCGCACCCAGACTGGGAAGCTTCTCAG
Seq A exon
GCACCACAGTACCGGCACTGCTGAACAGTACTTCCAACCAACTCTACCTGCATTTCCAGTCTGACATTAGTGTGGCAGCTGCTGGTTTCCACCTGGAATACAAAA
Seq C2 exon
CTGTAGGTCTTGCTGCATGCCAAGAACCAGCCCTCCCCAGCAACAGCATCAAAATCGGAGATCGGTACATGGTGAACGACGTGCTCTCCTTCCAGTGCGAGCCCGGGTACACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183117-'77-100,'77-96,80-100=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(32.1=94.4)
C2:
PF0008415=Sushi=PU(58.9=80.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCAGTTTTGCCACGGA
R:
GTACCCGGGCTCGCACTG
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains