RnoEX6056069 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78688541-78710706:+
Coord C1 exon
chr16:78688541-78688637
Coord A exon
chr16:78697705-78697809
Coord C2 exon
chr16:78710588-78710706
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTAACTCTTCTCCATGCAGGTA
3' ss Score
11.01
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
ATCCAAGTGATTAGCTTTGCCACGGAGCAGAACTGGGACTCCCTGGAGATCCATGACGGAGGAGACATGACGGCCCCCAGACTGGGCAGCTTCTCAG
Seq A exon
GTACCACAGTGCCCGCACTGCTGAATAGCACCTCCAACCAGCTCTGCCTGCACTTCCAGTCGGACATCAGTGTTGCCGCTGCGGGCTTTCACCTGGAATACAAAA
Seq C2 exon
CGGTGGGTCTGGCTGCGTGCCAGGAACCTGCTCTCCCGAGCAACGGCATCAAGATAGGAGACCGCTATATGGTGAACGATGTGCTGTCCTTCCAGTGCGAGCCTGGGTACACCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(58.9=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATTAGCTTTGCCACGGA
R:
CTGCAAGGTGTACCCAGGCTC
Band lengths:
211-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]