DreEX6073809 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36651787-36655306:-
Coord C1 exon
chr19:36655246-36655306
Coord A exon
chr19:36652032-36652136
Coord C2 exon
chr19:36651787-36651905
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACAACTCCTTTATTCTGCAGGTA
3' ss Score
9.93
5' ss Seq
AGAGTAGGA
5' ss Score
0.81
Exon sequences
Seq C1 exon
ATCCAGGTGATTAGCTTTGTGACTGAGCAGAACTGGGACTCTCTCGAGGTGTTTGATGGAG
Seq A exon
GTACAACAGTGCCAGCCCTTCTGAACAGCACCTCCAACCAGCTCTACCTGCACTTCTTCTCAGACATCAGCGTCTCTGCAGCCGGTTTCCGTCTGGAGTACAAGA
Seq C2 exon
CTGTGTCCCTCACTAGTTGTCCTGAACCGGTTGTACCCATGAATGGCTTCAGAGTGGGCGAAAGACTACAGATGAACAATGTTGTGTCCTTTCAGTGCGACCCTGGATTTACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'43-45,'43-44,45-45=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(21.3=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(58.9=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGATTAGCTTTGTGACTGA
R:
CTGCAGCGTAAATCCAGGGTC
Band lengths:
178-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]