MmuEX6096204 @ mm9
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128152961-128157469:+
Coord C1 exon
chr4:128152961-128153057
Coord A exon
chr4:128154602-128154706
Coord C2 exon
chr4:128157351-128157469
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCTTACTTTTCTCTCCCAGGAA
3' ss Score
11.35
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
Exon sequences
Seq C1 exon
ATTCAAGTCATCAGTTTTGTCACAGAGCAGAACTGGGACTCTCTAGAAGTGTTTGACGGAGCAGATAACACCGTAACCATGCTGGGGAGTTTCTCGG
Seq A exon
GAACAACAGTACCAGCCCTCCTGAATAGCACCTCCAATCAACTCTATCTCCACTTCTACTCTGACATCAGTGTGTCTGCTGCTGGCTTCCACTTGGAATATAAGA
Seq C2 exon
CCGTGGGCTTGAGCAGTTGTCCCGAACCAGCTGTACCCAGCAATGGGGTGAAGACAGGAGAGCGCTATTTGGTGAACGACGTGGTCTCTTTCCAGTGTGAGCCAGGATATGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'38-39,'38-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(58.9=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGTCATCAGTTTTGTCACAGA
R:
GGCATATCCTGGCTCACACTG
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: