RnoEX6023428 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146651090-146655575:+
Coord C1 exon
chr5:146651090-146651186
Coord A exon
chr5:146652427-146652531
Coord C2 exon
chr5:146655457-146655575
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCTTGCTGTTCTCTCCCAGGAG
3' ss Score
10.3
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATCCAAGTCATCAGTTTTGTCACAGAGCAGAACTGGGACTCTCTAGAAGTGTTTGACGGAGCAGATAACACCGTTAACATGCTGGGTAGTTTCTCAG
Seq A exon
GAGCAACAGTGCCCGCCCTCCTGAACAGCACCTCCAATCAGCTCTATCTACATTTCTACTCTGACATCAGCGTGTCTGCCGCTGGCTTCCACTTGGAATACAAGA
Seq C2 exon
CGGTGGGCTTGAGCAGTTGTCCCGAACCAGCTGTTCCCAGCAATGGGGTGAAGACAGGAGAGCGCTACTTGGTGAATGATGTGGTCTCTTTCCAGTGTGAGCCGGGATATGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'41-50,'41-49,42-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(58.9=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGTCATCAGTTTTGTCACAGA
R:
GGCATATCCCGGCTCACACT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]