BtaEX6019064 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112784429-112791324:+
Coord C1 exon
chr3:112784429-112784525
Coord A exon
chr3:112785611-112785715
Coord C2 exon
chr3:112791200-112791324
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGTTTCCTTGCCCAGGAA
3' ss Score
9.26
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
Exon sequences
Seq C1 exon
ATTCAAGTCGTCAGTTTTGTCACAGAGCAGAACTGGGACTCCCTGGAAGTGTTTGATGGTGCAGACAACACTGTTACCATGCTGGGGAGCTTCTCAG
Seq A exon
GAACAACCGTGCCTGCCCTACTGAATAGCACCTCCAACCAGCTCTACCTGCATTTCTACTCAGACATCAGTGTGTCTGCAGCCGGCTTCCACTTGGAGTACAAAA
Seq C2 exon
GTCTAGCGGTGGGCCTGAGCAGTTGTCCAGAACCTGCTGTGCCCAGTAATGGGGTGAAGACTGGTGAGCGCTACCTGGTGAACGATGTGGTCTCCTTCCAGTGTGAGCCAGGATATGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'50-48,'50-47,51-48=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(30.2=100)
A:
PF0043115=CUB=PD(31.1=91.7)
C2:
PF0008415=Sushi=PU(58.9=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCAGTTTTGTCACAGAGC
R:
GGCATATCCTGGCTCACACTG
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]