MmuEX6035504 @ mm9
Exon Skipping
Gene
ENSMUSG00000031640 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:46361396-46362438:-
Coord C1 exon
chr8:46362329-46362438
Coord A exon
chr8:46361604-46361766
Coord C2 exon
chr8:46361396-46361508
Length
163 bp
Sequences
Splice sites
3' ss Seq
GATATTTGTGTATGGTGCAGAAC
3' ss Score
5.62
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
AAATGTTTGTTTTCTTAAGACGTCTAAAAGTGGAAGACCAAGTCCCCCTATTCCTCAAGAAAACGCTATATCTGGATATAGTCTCCTCACCTGCAGAAAAACTCGCCCTG
Seq A exon
AACCCTGCCATTCCAAAATTTACTCTGGAGTTGACTTTGAAGGGGAAGAACTGAATGTGACCTTCGTGCAAGGAGCAGATGTCTGCCAAGAGACTTGTACAAAGACAATCCGCTGCCAGTTTTTTATTTACTCCTTACTCCCCCAAGACTGCAAGGAGGAGGG
Seq C2 exon
GTGTAAATGTTCCTTAAGGTTATCCACAGATGGCTCCCCAACTAGGATCACCTATGGCATGCAGGGGAGCTCCGGTTATTCTCTGAGATTGTGTAAACTTGTGGACAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031640-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=94.5)
C2:
PF0002421=PAN_1=PD(36.9=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAGACGTCTAAAAGTGGAAGACC
R:
CAGGGCTGTCCACAAGTTTACA
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: