RnoEX6055601 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50167231-50168581:+
Coord C1 exon
chr16:50167231-50167340
Coord A exon
chr16:50168210-50168372
Coord C2 exon
chr16:50168469-50168581
Length
163 bp
Sequences
Splice sites
3' ss Seq
GGTGTTTGTATGTGGTGCAGAAC
3' ss Score
4.42
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAATGTTTGTTTTCTTAAGACATCTAAAAGTGGAAGACCAAGTCCCCCTATTATTCAAGAAAATGCTGTATCTGGATACAGTCTCTTCACCTGCAGAAAAGCTCGCCCTG
Seq A exon
AACCCTGCCATTTCAAGATTTACTCTGGAGTTGCCTTCGAAGGGGAAGAACTGAACGCGACCTTCGTGCAGGGAGCAGATGCGTGCCAAGAGACTTGTACAAAGACCATCCGCTGTCAGTTTTTTACTTACTCATTGCTTCCCCAAGACTGCAAGGCAGAGGG
Seq C2 exon
GTGTAAATGTTCCTTAAGGTTATCCACGGATGGCTCTCCAACTAGGATCACCTATGAGGCACAGGGGAGCTCTGGTTATTCTCTGAGACTGTGTAAAGTTGTGGAGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=94.5)
C2:
PF0002421=PAN_1=PD(36.9=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAGACATCTAAAAGTGGAAGACC
R:
CAGAGCTCTCCACAACTTTACACA
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]