MmuEX6039649 @ mm10
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:14773237-14775428:+
Coord C1 exon
chr14:14773237-14773350
Coord A exon
chr14:14774891-14775052
Coord C2 exon
chr14:14775177-14775428
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTAAACTTTAATAGCCT
3' ss Score
5.52
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTACGATCAACAATCAGTGACTTTGCTGTATTTCTCACAATAGTAATAATGGTTGCAATTGACTACCTTGTAGGAATTCCATCTCCTAAACTTCATGTGCCTGAAAAGTTCGAG
Seq A exon
CCTACTGATCCAAGTAGGGGCTGGATCATAAGCCCTTTGGGAGATAACCCTTGGTGGACCTTACTAATTGCAGCAGTTCCAGCTCTCCTTTGTACTATTCTCATCTTTATGGACCAGCAGATCACAGCTGTAATCATCAACAGAAAAGAACACAAACTCAAG
Seq C2 exon
AAAGGAGCTGGCTACCACCTTGACTTGCTCATGGTTGGTGTCATGTTGGGAGTCTGCTCTATCATGGGCTTGCCGTGGTTTGTGGCTGCGACAGTGTTGTCTATAAGTCATGTCAACAGCTTGAAAGTGGAGTCTGAGTGTTCTGCTCCAGGGGAGCAGCCCAAGTTTCTGGGAATTCGTGAACAGCGGGTTACAGGGCTGATGATTTTTATCCTGATGGGCCTCTCTGTGTTCATGACTTCAGTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'41-50,'41-47,42-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(7.2=100)
A:
PF0095516=HCO3_cotransp=FE(10.3=100)
C2:
PF0095516=HCO3_cotransp=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTGCCTGAAAAGTTCGAG
R:
TGAACACAGAGAGGCCCATCA
Band lengths:
257-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types