MmuEX6040504 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32131995-32137082:-
Coord C1 exon
chr14:32137049-32137082
Coord A exon
chr14:32132911-32133232
Coord C2 exon
chr14:32131995-32132067
Length
322 bp
Sequences
Splice sites
3' ss Seq
ACGATACTGACTTTTCCTAGGAG
3' ss Score
6.3
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GAAGCACTGAAAACTTTGCTGTTTAGGGGAGCCG
Seq A exon
GAGCTCTGGCTGGGACGCCTCTCTGAAGAACAGCATGGAGGAGTGTAATAAAGAAGGACCAAGCAGCAGCTCTCAGGGCCCAGGATACTGTCCGGTGAAGGTTCCTGAAAGCCATGACCTGGAGAAGATATTACAAGAATCAAATTATCATCCAGAAAGAAATCCCCTAAATCCTGACCCCAAGACCCCGCCTTTACCCCTCACAGACCTAAGACAGCCCAGGAAGTCGCCTTTGACAGGCACTGATAAGAAGTACCCCCTGATGAAGCAGCGCGGATTCTATTCTGACATCCTCAGCCCTGGAACCTTAGACAAGCTTGGG
Seq C2 exon
AATGTGTGCTGTGGCCCCTACATGTCCCAGAATTTGATTCGCCAAGCTGACCTCGACAAGTTCACCCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.719 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: