RnoEX6054750 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7401687-7406951:-
Coord C1 exon
chr16:7406918-7406951
Coord A exon
chr16:7402815-7403136
Coord C2 exon
chr16:7401687-7401759
Length
322 bp
Sequences
Splice sites
3' ss Seq
GACACTGAATCTTTTCCTAGGAG
3' ss Score
6.63
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGGCATCGAAAACTTTGCTGTTTAGAGGAGTCG
Seq A exon
GAGCTCTGGCTCGGACAAGTCTCTGAAGAACGGCATGGAGGAGTGTGATAAAGAAGAAGCGAGCACTAGCTCTCAGGGCCCAGGATACTGTCCAGCGAACGTTCCTGAAAATCATGACCTGGAGAAGATGTTAAAAGAATCAAGCCGTAATCCAGAAAAGACTTCCCCAAATCCCGAACTCAAGACCCCACCTTTACCCCTCTCAGACTTAGGGCAGCCCAGGAAGTCGCCTTTGGCAGGCACCGATAAGAAGTACCCCATCATGAAGCAGCGTGGATTCTATTCCGACATCCTCAGCCCTGGAACCTTAGACCAGCTTGGG
Seq C2 exon
GATGTGTGCTGTGGGCCCTACCTGTCCCAGAATTTGATTCGTCAAGCCGACCTCGACAAGTTCACCCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'2-5,'2-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.770 C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]