MmuEX6041392 @ mm10
Exon Skipping
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54962054-54963132:-
Coord C1 exon
chr14:54963021-54963132
Coord A exon
chr14:54962686-54962778
Coord C2 exon
chr14:54962054-54962117
Length
93 bp
Sequences
Splice sites
3' ss Seq
CATCTCTGCTCCTTTCACAGGGC
3' ss Score
10.25
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCGGGGAAGACTGTGAACACAAAACGTGTCATCCAGTACTTTGCCAGCATTGCAGCCATAGGGGACCGTAGCAAGAAGGAAAATCCTAATGCAAACAAG
Seq A exon
GGCACCCTGGAGGACCAGATTATCCAGGCTAACCCCGCTCTGGAGGCCTTCGGCAACGCCAAGACTGTCCGGAATGACAACTCCTCCCGCTTT
Seq C2 exon
GGGAAATTCATCAGGATCCACTTTGGAGCTACTGGAAAGCTGGCTTCTGCAGACATAGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGCGGGGAAGACTG
R:
GGTCTCTATGTCTGCAGAAGCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types