RnoEX0057032 @ rn6
Exon Skipping
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33625765-33626952:-
Coord C1 exon
chr15:33626841-33626952
Coord A exon
chr15:33626506-33626598
Coord C2 exon
chr15:33625765-33625828
Length
93 bp
Sequences
Splice sites
3' ss Seq
AATTTCTGCTCCTTTCACAGGGC
3' ss Score
9.38
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TGGAGAATCCGGAGCGGGGAAGACTGTCAACACGAAGCGTGTCATCCAGTACTTTGCTAGCATTGCAGCCATAGGGGACCGTAGCAAGAAGGACAATCCTAATGCAAACAAG
Seq A exon
GGCACCCTGGAGGACCAGATTATCCAGGCTAACCCTGCTCTGGAGGCCTTTGGCAACGCCAAGACTGTCCGGAATGACAACTCCTCCCGCTTT
Seq C2 exon
GGGAAGTTCATCAGGATCCACTTTGGAGCCACAGGAAAGCTGGCTTCTGCAGACATAGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGCGGGGAAGACTG
R:
GGTCTCTATGTCTGCAGAAGCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]