MmuEX6054088 @ mm10
Exon Skipping
Gene
ENSMUSG00000079022 | Col22a1
Description
collagen, type XXII, alpha 1 [Source:MGI Symbol;Acc:MGI:1916950]
Coordinates
chr15:71912719-71915837:-
Coord C1 exon
chr15:71915784-71915837
Coord A exon
chr15:71915106-71915159
Coord C2 exon
chr15:71912719-71912772
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTAAACTTCTTCTTTCAGGGT
3' ss Score
10.78
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGCCCGCCTGGACCACCCGGTGTTCCAGGGCCCCCTGGACCTGGAGGACCCCCG
Seq A exon
GGTTTACCTGGCGAGCTCGGCTTCCCGGGAAAACCTGGGCCTGCTGGGCATGCG
Seq C2 exon
GGGACACCTGGAAAGGATGGGCTGAATGGACCACCAGGCCTTCCTGGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079022-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.2=100)
A:
PF0139113=Collagen=FE(27.9=100),PF0139113=Collagen=PU(11.0=44.4)
C2:
PF0139113=Collagen=PD(16.7=77.8),PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCCGGTGTTCCAGG
R:
GAAGGCCTGGTGGTCCATTC
Band lengths:
86-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types