RnoEX6032544 @ rn6
Exon Skipping
Gene
ENSRNOG00000024824 | Col22a1
Description
collagen type XXII alpha 1 chain [Source:RGD Symbol;Acc:1309081]
Coordinates
chr7:113131452-113133582:-
Coord C1 exon
chr7:113133529-113133582
Coord A exon
chr7:113132864-113132917
Coord C2 exon
chr7:113131452-113131505
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTATACTTTCCCTTTCAGGGT
3' ss Score
12.73
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGCCCGCCTGGACCACCCGGTGTTCAAGGGCCCCCTGGACCAGGAGGTCCCCCG
Seq A exon
GGTTTACCTGGTGAGCTCGGCTTCCCGGGAAAACCTGGGCCTGCTGGGCATGTG
Seq C2 exon
GGACCACCTGGAAAGGATGGGGTGAATGGGCCTCCAGGCTTGCCTGGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024824-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(18.4=77.8)
C2:
PF0139113=Collagen=PD(16.5=77.8),PF0139113=Collagen=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGGTGTTCAAGGGC
R:
CTTGGAACCAGGCAAGCC
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]