MmuEX6054089 @ mm9
Exon Skipping
Gene
ENSMUSG00000079022 | Col22a1
Description
collagen, type XXII, alpha 1 [Source:MGI Symbol;Acc:MGI:1916950]
Coordinates
chr15:71741471-71745589:-
Coord C1 exon
chr15:71745536-71745589
Coord A exon
chr15:71743149-71743202
Coord C2 exon
chr15:71741471-71741524
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCTCTTGGACCAGGGG
3' ss Score
8.26
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTTTACCTGGCGAGCTCGGCTTCCCGGGAAAACCTGGGCCTGCTGGGCATGCG
Seq A exon
GGGACACCTGGAAAGGATGGGCTGAATGGACCACCAGGCCTTCCTGGCTCCAAG
Seq C2 exon
GGAGAACCAGGAGACTCTGGCGAAAGTGGCGTACCTGGAATGCCAGGACCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079022-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.2=100),PF0139113=Collagen=PU(6.8=27.8)
A:
PF0139113=Collagen=PD(16.7=77.8),PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTACCTGGCGAGCTCG
R:
CCGAGGTCCTGGCATTCCA
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: